aboutsummaryrefslogtreecommitdiff
path: root/content/blog/2022-perf/index.md
blob: 44df617b264ce90358da3fdf92d83c5cc2594192 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
+++
title="Bringing theoretical design and observed performances face to face"
date=2022-09-26
+++


*For the past years, we have extensively analyzed possible design decisions and their theoretical tradeoffs on Garage, being it on the network, data structure, or scheduling side. And it worked well enough for our production cluster at Deuxfleurs, but we also knew that people started discovering some unexpected behaviors. We thus started a round of benchmark and performance measurement to see how Garage behaves compared to our expectations.*

<!-- more -->

---

## ⚠️ Disclaimer
The following results must be taken with a critical grain of salt due to some limitations that are inherent to any benchmark. We try to reference them as exhaustively as possible in this section, but others limitation might exist. 

Most of our tests are done on simulated networks that can not represent all the diversity of real networks (dynamic drop, jitter, latency, all of them could possibly be correlated with throughput or any other external event). We also limited ourselves to very small workloads that are not representative of a production cluster. Furthermore, we only benchmarked some very specific aspects of Garage, on which we are currently working on: our results are thus not an overview of the whole software performances.

For some benchmarks, we used Minio as a reference. It must be noted that we did not try to optimize its configuration as we have done on Garage, and more generally, we have way less knowledge on Minio than on Garage, which can lead to underrated performance measurements for Minio.
It must also be noted that Garage and Minio are systems with different feature sets, *eg.* Minio supports erasure coding for better data density while Garage doesn't, Minio implements way more S3 endpoints than Garage, etc. Such feature have necessarily a cost that you must keep in mind when reading plots. You should consider Minio results as a way to contextualize our results, to check that our improvements are not artificials compared to existing object storage implementations.

Impact of the testing environment is also not evaluated (kernel patches, configuration, parameters, filesystem, hardware configuration, etc.), some of these configurations could favor one configuration/software over another. Especially, it must be noted that most of the tests were done on a consumer-grade computer and SSD only, which will be different from most production setups. Finally, our results are also provided without statistical tests to check their significance, and thus might be statistically not significative.

When reading this post, please keep in mind that **we are not making any business or technical recommendation here, this is not a scientific paper either**; we only share bits of our development process as honestly as possible.
Read [benchmarking crimes](https://gernot-heiser.org/benchmarking-crimes.html), make your own tests if you need to take a decision, and remain supportive and caring with your peers...

## About our testing environment

We started a batch of tests on [Grid5000](https://www.grid5000.fr/w/Grid5000:Home), a large-scale and flexible testbed for experiment-driven research in all areas of computer science, under the [Open Access](https://www.grid5000.fr/w/Grid5000:Open-Access) program. During our tests, we used part of the following clusters: [nova](https://www.grid5000.fr/w/Lyon:Hardware#nova), [paravance](https://www.grid5000.fr/w/Rennes:Hardware#paravance), and [econome](https://www.grid5000.fr/w/Nantes:Hardware#econome) to make a geo-distributed topology. We used the Grid5000 testbed only during our preliminary tests to identify issues when running Garage on many powerful servers, issues that we then reproduced in a controlled environment; don't be surprised then if Grid5000 is not mentioned often on our plots.

To reproduce some environments locally, we have a small set of Python scripts named [mknet](https://git.deuxfleurs.fr/Deuxfleurs/mknet) tailored to our needs[^1]. Most of the following tests where thus run locally with mknet on a single computer: a Dell Inspiron 27" 7775 AIO, with a Ryzen 5 1400, 16GB of RAM, a 512GB SSD. In term of software, NixOS 22.05 with the 5.15.50 kernel is used with an ext4 encrypted filesystem. The `vm.dirty_background_ratio` and `vm.dirty_ratio` have been reduced to `2` and `1` respectively as, with default values, the system tends to freeze when it is under heavy I/O load.

## Efficient I/O

**Time To First Byte** - One specificity of Garage is that we implemented S3 web endpoints, with the idea to make it the platform of choice to publish your static website. When publishing a website, one metric you observe is Time To First Byte (TTFB), as it will impact the perceived reactivity of your wbesite. On Garage, time to first byte was a bit high, especially for objects of 1MB and more. This is not surprising as, until now, the smallest level of granularity was the block level, which are set to at most 1MB by default. Hence, when you were sending a GET request, the block had to be fully retrieved by the gateway node from the storage node before starting sending any data to the client. With Garage v0.8, we integrated a block streaming logic which allows the gateway to send the beginning of a block without having to wait for the full block from the storage node. We can visually represent the difference as follow:

![A schema depicting how streaming improves the delivery of a block](schema-streaming.png)

As our default block size is only 1MB, the difference will be very small on fast networks: it takes only 8ms to transfer 1MB on a 1Gbps network. However, on a very slow network (or a very congested link with many parallel requests handled), the impact can be much more important: at 5Mbps, it takes 1.6 second to transfer our 1MB block, and streaming could heavily improve user experience. 

We wanted to see if this theory helds in practise: we simulated a low latency but slow network on mknet and did some request with (garage v0.8 beta) and without (garage v0.7) block streaming. We also added Minio as a reference.

![Plot showing the TTFB observed on Garage v0.8, v0.7 and Minio](ttfb.png)

As planned, Garage v0.7 that does not support block streaming features TTFB between 1.6s and 2s, which correspond to the computed time to transfer the full block. On the other side of the plot, we see Garage v0.8 with very low TTFB thanks to our streaming approach (the lowest value is 43 ms). Minio sits between our 2 implementations: we suppose that it does some form of batching, but on less than 1MB.

**Read/write throughput** - As soon as we publicly released Garage, people started benchmarking it, comparing its performances to writing directly on the filesystem, and observed that Garage was slower (eg. [#288](https://git.deuxfleurs.fr/Deuxfleurs/garage/issues/288)). To improve the situation, we put costly processing like hashing on a dedicated thread and did many compute optimization ([#342](https://git.deuxfleurs.fr/Deuxfleurs/garage/pulls/342), [#343](https://git.deuxfleurs.fr/Deuxfleurs/garage/pulls/343)) which lead us to `v0.8 beta 1`. We also noted that logic we had to better control the resource usage and detect errors (semaphore, timeouts) were artificially limiting performances: we made them less restrictive at the cost of higher resource consumption under load ([#387](https://git.deuxfleurs.fr/Deuxfleurs/garage/pulls/387)), resulting in `v0.8 beta 2`. Finally, we currently do multiple `fsync` calls each time we write a block. We know that this is expensive and did a test build without any `fsync` call ([see the commit](https://git.deuxfleurs.fr/Deuxfleurs/garage/commit/432131f5b8c2aad113df3b295072a00756da47e7)) that will not be merged, just to assess the impact of `fsync`. We refer to it as `no-fsync` in the following plot.

*A note about fsync: for performance reasons, OS often do not write directly to the disk when you create or update a file in your filesystem: your write will be kept in memory, and flush later in a batch with other writes. If a power loss occures before the OS has time to flush the writes on the disk, they will be lost. To ensure that a write is effectively written on disk, you must use the [fsync(2)](https://man7.org/linux/man-pages/man2/fsync.2.html) system call: it will block until your file or directory has been written from your volatile RAM memory to your persisting storage device. Additionaly, the exact semantic of fsync [differs from one OS to another](https://mjtsai.com/blog/2022/02/17/apple-ssd-benchmarks-and-f_fullsync/) and, even on battle-tested software like Postgres, [they "did it wrong for 20 years"](https://archive.fosdem.org/2019/schedule/event/postgresql_fsync/). Note that on Garage, we are currently working on our "fsync" policy and thus, you should expect limited data durability as we are aware of some inconsistency on this point (which we describe in the following).*

To assess performance improvements, we used the benchmark tool [minio/warp](https://github.com/minio/warp) in a non-standard configuration, adapted for small scale tests, and we kept only the aggregated result named "cluster total". The goal of this experiment is to get an idea of the cluster performance with a standardized and mixed workload. 

![Plot showing IO perf of Garage configs and Minio](io.png)

Minio, our ground truth, features the best performances in this test. Considering Garage, we observe that each improvement we made has a visible impact on its performances. We also note that we have a progress margin in term of performances compared to Minio: additional benchmarks, test and monitoring could help better understand the remaining difference.
 

## A myriad of objects

**Testing metadata engines** - With Garage, we chose to not store metadata directly on the filesystem, like Minio for example, but in an on-disk fancy B-Tree structure, in other words, in an embedded database engine. Until now, the only available option was [sled](https://sled.rs/), but we started having serious issues with it, and we were not alone ([#284](https://git.deuxfleurs.fr/Deuxfleurs/garage/issues/284)). With Garage v0.8, we introduce an abstraction semantic over the features we expect from our database, allowing us to switch from one backend to another without touching the rest of our codebase. We added two additional backends: lmdb ([heed](https://github.com/meilisearch/heed)) and sqlite ([rusqlite](https://github.com/rusqlite/rusqlite)). **Keep in mind that they are both experimental: contrarily to sled, we have never run them in production for a long time.**

Similarly to the impact of fsync on block writing, each database engine we use has its own policy with fsync. Sled flushes its write every 2 seconds by default, this is [configurable](https://garagehq.deuxfleurs.fr/documentation/reference-manual/configuration/#sled-flush-every-ms)). lmdb by default does an `fsync` on each write, on early tests it lead to very slow resynchronizations between nodes. We added 2 flags: [MDB\_NOSYNC](http://www.lmdb.tech/doc/group__mdb__env.html#ga5791dd1adb09123f82dd1f331209e12e) and [MDB\_NOMETASYNC](http://www.lmdb.tech/doc/group__mdb__env.html#ga5021c4e96ffe9f383f5b8ab2af8e4b16) that basically deactivate fsync. On sqlite, it is also possible to deactivate fsync with `pragma synchronous = off;`, but we did not start any optimization work on it: our sqlite implementation fsync all the data on the disk. Additionaly, we are using these engine through a Rust binding that had to do some tradeoff on the concurrency part. **Our comparison will not reflect the raw performances of these database engine, but instead, our integration choices.**

Still, we think it makes sense to evaluate our implementations in their current state in Garage. We designed a benchmark that is intensive on the metadata part of the software, ie. handling tiny files. We chose again minio/warp but we configure it with the smallest possible object size supported by warp, 256 bytes, to put some pressure on the metadata engine. We evaluate sled twice: with its default configuration, and with a configuration where we set a flush interval of 10 minutes to disable fsync. 

*Note that S3 has not been designed for such small objects; a regular database, like Cassandra, would be more appropriate for such workloads. This test has only be designed to stress our metadata engine, it is not indicative of real world performances.*

![Plot of our metadata engines comparison with Warp](db_engine.png)

Unsurprinsingly, we observe abysall performances for sqlite, the engine we have the less tested and kept fsync for each write. 
lmdb performs twice better than default sled and 60% better than no fsync sled in our benchmark.
Additionaly, and not depicted on these plots, LMDB uses way less disk storage and RAM; we would like to quantify that in the future.
As we are only at the very beginning of our work on metadata engine, it is hard to draw strong conclusions.
Still, we can say that sqlite is not ready for production workloads, 
LMDB looks very promising both in term of performances and resource usage,
it is a very good candidate for Garage's default metadata engine in the future,
and we need to define a data policy for Garage that would help us arbitrate between performances and durability.

*To fsync or not to fsync? Performance is nothing without reliability, so we need to better assess the impact of validating a write and then losing it. Because Garage is a distributed system, even if a node loses its write due to a power loss, it will fetch it back from the 2 other nodes storing it. But rare situations where 1 node is down and the 2 others validated the write and then lost power can occure, what is our policy in this case? For storage durability, we are already supposing that we never loose the storage of more than 2 nodes, should we also expect that we don't loose more than 2 nodes at the same time? What to think about people hosting all their nodes at the same place without an UPS?*

**Storing million of objects** - 

![](1million-both.png)

![](1million.png)

## An unpredictable world

- low bandwidth

![]()

- high network latency. phenomenon we name amplification 

![](amplification.png)

- complexity (constant time)

![](complexity.png)


## Future work

- srpt

- better analysis of the fsync / data reliability impact

- analysis and comparison of Garage at scale

- try to better understand ecosystem (riak cs, minio, ceph, swift) -> some knowledge to get

[^1]: Yes, we are aware of [Jepsen](https://github.com/jepsen-io/jepsen) existence. This tool is far more complex than our set of scripts, but we know that it is also way more versatile.