Abstract database behind generic interface and implement alternative drivers (#322)

- [x] Design interface
- [x] Implement Sled backend
  - [x] Re-implement the SledCountedTree hack ~~on Sled backend~~ on all backends (i.e. over the abstraction)
- [x] Convert Garage code to use generic interface
- [x] Proof-read converted Garage code
- [ ] Test everything well
- [x] Implement sqlite backend
- [x] Implement LMDB backend
- [ ] (Implement Persy backend?)
- [ ] (Implement other backends? (like RocksDB, ...))
- [x] Implement backend choice in config file and garage server module
- [x] Add CLI for converting between DB formats
- Exploit the new interface to put more things in transactions
  - [x] `.updated()` trigger on Garage tables

Fix #284

**Bugs**

- [x] When exporting sqlite, trees iterate empty??
- [x] LMDB doesn't work

**Known issues for various back-ends**

- Sled:
  - Eats all my RAM and also all my disk space
  - `.len()` has to traverse the whole table
  - Is actually quite slow on some operations
  - And is actually pretty bad code...
- Sqlite:
  - Requires a lock to be taken on all operations. The lock is also taken when iterating on a table with `.iter()`, and the lock isn't released until the iterator is dropped. This means that we must be VERY carefull to not do anything else inside a `.iter()` loop or else we will have a deadlock! Most such cases have been eliminated from the Garage codebase, but there might still be some that remain. If your Garage-over-Sqlite seems to hang/freeze, this is the reason.
  - (adapter uses a bunch of unsafe code)
- Heed (LMDB):
  - Not suited for 32-bit machines as it has to map the whole DB in memory.
  - (adpater uses a tiny bit of unsafe code)

**My recommendation:** avoid 32-bit machines and use LMDB as much as possible.

**Converting databases** is actually quite easy. For example from Sled to LMDB:

```bash
cd src/db
cargo run --features cli --bin convert -- -i path/to/garage/meta/db -a sled -o path/to/garage/meta/db.lmdb -b lmdb
```

Then, just add this to your `config.toml`:

```toml
db_engine = "lmdb"
```

Co-authored-by: Alex Auvolat <alex@adnab.me>
Reviewed-on: https://git.deuxfleurs.fr/Deuxfleurs/garage/pulls/322
Co-authored-by: Alex <alex@adnab.me>
Co-committed-by: Alex <alex@adnab.me>

1 files changed, 36 insertions, 0 deletions

diff --git a/src/db/Cargo.toml b/src/db/Cargo.toml
new file mode 100644
index 00000000..6d8f64be
--- /dev/null
+++ b/src/db/Cargo.toml
@@ -0,0 +1,36 @@
+[package]
+name = "garage_db"
+version = "0.8.0"
+authors = ["Alex Auvolat <alex@adnab.me>"]
+edition = "2018"
+license = "AGPL-3.0"
+description = "Abstraction over multiple key/value storage engines that supports transactions"
+repository = "https://git.deuxfleurs.fr/Deuxfleurs/garage"
+readme = "../../README.md"
+
+[lib]
+path = "lib.rs"
+
+[[bin]]
+name = "convert"
+path = "bin/convert.rs"
+required-features = ["cli"]
+
+[dependencies]
+err-derive = "0.3"
+hexdump = "0.1"
+log = "0.4"
+
+heed = "0.11"
+rusqlite = { version = "0.27", features = ["bundled"] }
+sled = "0.34"
+
+# cli deps
+clap = { version = "3.1.18", optional = true, features = ["derive", "env"] }
+pretty_env_logger = { version = "0.4", optional = true }
+
+[dev-dependencies]
+mktemp = "0.4"
+
+[features]
+cli = ["clap", "pretty_env_logger"]